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MAPPING THE GENOME, TARGETING ALZHEIMERS DISEASE
NEW YORK CITYWith the mapping of the human genome, promising new diagnostic and treatment options for people with complex diseases such as Alzheimers disease are being hotly pursued. New techniques and technologies in mapping and sequencing genes will enable the design of accurate, individualized treatment for patients and the routine prediction of individual predisposition to disease.
The enhanced knowledge of genetic inheritance will allow for the profiling of variations between individuals DNA to predict responses to a particular medicine. It hardly seems speculative to predict that the rapidly expanding field of pharmacogenetics will soon be part of the medical mainstream. And according to Allen D. Roses, MD, Senior Vice President of Genetics Research at GlaxoSmithKline, Research Triangle Park, North Carolina, genetic testing will also identify individual susceptibility genes, changing the face of medicine in the 21st century.
ACCURACY AND EPIDEMIOLOGY
What the genome has given us is all the markers, and the ability to find all the markers, across the whole genome, said Dr. Roses at a media briefing on the mapping of the human genome. Previously, researchers engaged in the same type of hypothesis-driven, mostly wrong research. We see that in our industry, where our targets have a 90% attrition rate, not because theyre lousy as molecules to treat people, but because they dont have any relationship at all to the disease. They were just the product of somebodys best guess. We can make quicker progress by getting specific genetic susceptibility information faster. Thats what we now have the capabilities of doing. The goal is drugs created based on these genes, thereby targeting the disease more relevantly.
To underscore the application of these new technologies, Dr. Roses explained the epidemiology of the apolipoprotein E (APOE) gene; the APOE*E allele is an Alzheimers disease susceptibility gene responsible for many cases of the degenerative disorder. The three forms of this geneAPOE*E2, APOE*E3, and APOE*E4can be inherited from each parent. This allows for six possible combinations at different frequencies. Those with a 4/4 genotype, who have inherited an APOE*E4 from both parents, can expect an average age of onset for Alzheimers disease of 70 years or earlier. Inheritance of an APOE*E3 and an APOE*E2 allele results in an average age of onset of well over 93 years of age.
On the basis of that simple polymorphism in one gene, the average age of onset risk for Alzheimers disease is very great20 years difference or more, explained Dr. Roses. Thats what we mean by susceptibility, he added.
How frequent are these allele combinations? The APOE*E4 homozygotes represent about 2% of the US population, whereas the 3/4 genotype accounts for 20% of the population.
Researchers can either go out with the popular theory that youre going to go after the things that you can see under a microscope, or you can go after it by learning the mechanism of disease, said Dr. Roses. He described an experiment that illuminated the mechanism by which Alzheimers disease works.
Eric M. Reiman, MD, of the Department of Psychiatry at the University of Arizona, led a study in which a population of hundreds of nonpatient volunteers (ages 50 to 63 years) with a family history of probable Alzheimers disease underwent positron emission tomography (PET) scans and were genotyped. Two years later, the same data were taken from 10 persons who had the 4/4 genotype. At that time, clinical testing for Alzheimers disease or any detectable memory deficits was negative. Fifteen controls with the 3/3 or 2/3 genotype tested negative as well.
Glucose utilization in both groups was compared. PET scans from patients with Alzheimers disease revealed decreased sugar or glucose utilization in very specific parts of the brain. Those volunteers (nonpatients) with the 4/4 genotype showed the same metabolic abnormality as people with Alzheimers disease, yet they had no symptoms and were about 20 years before their expected average age of onset of disease.
The mechanism may relate to the fact that there was decreased glucose metabolism, and wouldnt that be an interesting place to look? he asked. The world is looking at amyloid, or the goo thats laid down in the brain. If we could stop it here, then these people would never see Alzheimers disease. They may have the genetic propensity for it, but if you can intervene and correct the metabolism, then you wipe out the disease.
In 1997, Dr. Roses research group went on to map across the region of the genome where APOE is coded using single-nucleotide polymorphisms (SNP)APOE-like elements that may or may not be in genes but provide markers in a genome.
Whereas previously two million markers were identified, SNP mapping allowed the isolation of about 45,000 bases, which contained the coding regions of only two genesAPOC1 and APOE. Had these methods been available in 1989 or 1990, we would have found it in a four-month period of time instead of a six-year period of time, Dr. Roses said. And now we could do this in a couple of weeks.
BETTER, SAFER DRUGS
Just as there are susceptibility genes for Alzheimers disease, there may be susceptibility genes for drug reactionsand these inherited susceptibilities to drug reactions can also be detected with a series of markers across the genome. In the next year, Dr. Roses predicts, the first proof of principle study will be done to test for an adverse drug reaction. Accelerated recovery rates, increased efficacy rates, and fewer adverse events are anticipated when medications are prescribed via the analyzation of a patients individual genetic profile.
The impact of this personalized medicine will be so great that, according to Dr. Roses, you can envision a world, in the next five or 10 years
in which the FDA [Food and Drug Administration] and other regulators are going to demand that this is done, so that we can pick out before you take your drug whether youre one of the people who is going to get an adverse reaction.
We all go to the doctor for the same reason. You want an accurate diagnosis; you want medicine thats going to cure you, or certainly treat you properly; you want no adverse events; and you want it for free. Youre going to get three out of four, for a lot cheaper than what youre paying for now, Dr. Roses explained. In fact, pharmacogenetics may bring about decreases in health care costs realized on a small and large scale, as patients will not be paying for inefficacious medicine, side effects, and adverse events. Cost containment may also be achieved through a reduction in the number of failed drug trials, shortening the length of time needed for drug approval, and increases in the number of possible drug targets.
SMALL DISEASES AND BIG DRUGS
The same methodologies that are now employed to more accurately pursue therapies for complex disease such as Alzheimers disease, depression, and cancer will also make it affordable to go after single-gene, orphan diseases. Why dont we work on my disease first? Because it isnt worth a lot commercially, echoed Dr. Roses of what had been the prevailing sentiment. However, the recent advances now make pursuit of these conditions and their cures more plausible. If we can target that orphan disease and make our trials smaller and less expensive, then this methodology will be a great equalizer among diseases. We can go in the natural order that a physician would love to, which is what we consider the worst diseases first, rather than the most profitable diseases only.
Does the precision of genetics spell the death of the blockbuster drug? Drugs that are going to have a large effect on a symptom or a disease, that are fairly safe, will still be utilized. Pharmacogenetics can be used to put into place a reasonable, rational surveillance system for new drug entities, he maintains, and can be embedded in clinical trials as the first entry into the efficacy market. If you can cut down your double-blind trials, the people you know will get a response. Then youre taking a lot of the noise out of the system, [and] you can do them smaller and faster. In the business world, 60% to 70% of the costs of these huge research and development budgets in pharmaceutical companies is in the clinical regulatory arena; its not in what I do.
NR
Heidi W. Moore
Suggested Reading
1. McPherson JD, Marra M, Hillier L, et al. A physical map of the human genome. The International Human Genome Mapping Consortium. Nature. 2001;409:934-941.
2. Reiman EM, Caselli RJ, Chen K, et al. Declining brain activity in cognitively normal apolipoprotein E e4 heterozygotes: a foundation for using positron emission tomography to efficiently test treatments to prevent Alzheimers disease. Proc Natl Acad Sci USA. 2001;98:3334-3339.
3. Roses AD. Pharmacogenetics and the practice of medicine. Nature.2000;405: 857-865.
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